PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02872.80
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 448aa    MW: 48618.1 Da    PI: 7.6082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02872.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.6e-09105126426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C+++ + G C+yGd+C+F H+
  Jcr4S02872.80 105 KVCNYWVQ-GKCSYGDKCRFLHS 126
                    68******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.3762450IPR000571Zinc finger, CCCH-type
SMARTSM003562.12449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7102126IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6103127IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6105126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7105124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.3E-36125340IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6132171IPR001680WD40 repeat
SuperFamilySSF509781.42E-36133358IPR017986WD40-repeat-containing domain
PfamPF004007.0E-5135171IPR001680WD40 repeat
PROSITE profilePS5029413.079139180IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.218139180IPR001680WD40 repeat
PROSITE patternPS006780158172IPR019775WD40 repeat, conserved site
SMARTSM0032024211248IPR001680WD40 repeat
SMARTSM003207.9E-4287324IPR001680WD40 repeat
PfamPF004000.014289323IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.3E-36374440IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.42E-36387440IPR017986WD40-repeat-containing domain
SMARTSM003204.5402439IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDLDAQGGNS RVFQRLGGQS VNDPRHQIVC LHWRAGRCNR FPCPYLHREL PAPPPAGSNG  60
NASKRGFAGD SGFSGRSGTR RSGNFSNSST WGRVGNNKTL RKAEKVCNYW VQGKCSYGDK  120
CRFLHSWSLG ESFALLTSLE GHQKVVTGIA LPSGSDKLYT GSNDETVRVW DCQSGQCMGV  180
VQLGGEVGCM ISEGPWIFVG VPNVVKAWNT QTNTDLSLTG PVGQVYALVV GNDLLFAGTQ  240
DGAILAWKFN AATFNFEPAA SLTGHSVAVV SLVVGANRLY SGSMDHSIRC VQTLTDHTSV  300
VMSVLCWDQF LLSCSLDQTI KVWAATESGN LEVTYTHKEE HMVSDTLTKK ISPVLTWINV  360
VYSEGILHLG LLTLCGMHDF EGKPILLCSC NDNSVHLFDL PSFSERGKIF SKQEIRAIQT  420
GPGGLFFTGD GTGQVRVWKC QVEPTPVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B3e-13118323175387F-box/WD repeat protein 7
2ovq_B3e-13118323175387F-box/WD repeat protein 7
2ovr_B3e-13118323175387F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090334.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067JEM30.0A0A067JEM3_JATCU; Uncharacterized protein
STRINGPOPTR_0012s13800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1